Repository containing all custom pipeline, perl scripts and R scripts used for RNA-sequencing data analyses.
These will be published as part of a submitted publication: Nalpas, N.C. et al. 2014 "Alveolar macrophage response to Mycobacterium bovis infection" (submission process)
In order to use the provided pipeline and scripts, user should refer first to the RNA-seq_pipeline.txt file, which will lead to the diverse other scripts. Further README files may be added for each scripts, in order to facilitate user's utilisation and understanding.
For any inquirements concerning our article or repository, please contact:
Nalpas, N.C. nicolas.nalpas@ucdconnect.ie
or
MacHugh, D.E. david.machugh@ucd.ie
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