DWM_utils

Sandbox of useful helper functions, code snippets, utilities, and assorted resources for bioinformatic analyses

Check out these repos that I have cleaned up and forked out of DWM_utils:

• slide_snake
• txg_snake

See README in each subdirectory for more detailed descriptions

align_pipes/

Snakemake workflows for common alignment tasks

plotting_utils/

Themes and color palettes for plotting (focused on single-cell data visualization, of course)

ref_utils/

Utilities for generating custom reference genomes/transcriptomes (STAR, cellranger, spaceranger, etc.)

sc_utils/

Wrapper and helper functions written for single cell RNA sequencing analysis.

seq_utils/

General utility functions for handling sequencing data.