Merge pull request #40 from metagentools/Vini2-patch-1 #10

	name: CI conda

	on:
	push:
	branches: [ develop ]
	pull_request:
	branches: [ develop ]


	jobs:
	tests:
	name: "Python ${{ matrix.python-version }}"
	runs-on: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -el {0}

	strategy:
	matrix:
	os: [macos-12, ubuntu-latest]
	python-version: ["3.8", "3.9", "3.10", "3.11"]

	steps:
	- uses: "actions/checkout@v3"
	with:
	fetch-depth: 0

	# Setup conda env
	- uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: metacoag
	environment-file: environment.yml
	python-version: ${{ matrix.python-version }}
	auto-activate-base: false

	- name: "Setup graphbin on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
	run: \|
	python -m pip install --upgrade pip
	pip install .

	- name: "Generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
	run: \|
	pip install pytest pytest-cov
	pytest --cov=graphbin --cov-report=xml --cov-append

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