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fix line 32 in quality_control.smk #1

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bamarshall2 opened this issue Oct 13, 2021 · 0 comments · Fixed by #3 or #4
Closed

fix line 32 in quality_control.smk #1

bamarshall2 opened this issue Oct 13, 2021 · 0 comments · Fixed by #3 or #4

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@bamarshall2
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Change line 32 in quality_control.smk from
out = lookup_sample_metadata(sample, "file_path", pep)
to
out = lookup_sample_metadata(sample, "infile_path", pep)

"infile_path" is the name of the column in the sample sheet, not "file_path"
@bamarshall2 bamarshall2 mentioned this issue Oct 13, 2021
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@mikewolfe mikewolfe linked a pull request Oct 18, 2021 that will close this issue
add rule to rename output #3
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@mikewolfe mikewolfe mentioned this issue Oct 19, 2021
Merged
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add rule to rename output bamarshall2/Bacterial_reseq
Version 0.0.1 mikewolfe/Bacterial_reseq
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@bamarshall2