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Changed assembling feature for Archer BCR kit #1653

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merged 3 commits into from
Jul 10, 2024
Merged

Changed assembling feature for Archer BCR kit #1653

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678295b
Changed assembling feature for Archer BCR kit to VDJRegion according …
mizraelson May 9, 2024
aa33af8
regression tests automated change
mizraelson May 9, 2024
6c6026d
Merge pull request #1652 from milaboratory/mixcr-regression-tests/arc…
mizraelson May 9, 2024
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2 changes: 1 addition & 1 deletion changelogs/v4.6.1.md
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Expand Up @@ -44,4 +44,4 @@
## New Presets

- Added preset `takara-mouse-rna-bcr-umi-smarseq` for new Takara SMART-Seq Mouse BCR (with UMIs) kit
- Added preset `idt-human-rna-bcr-umi-archer` and `idt-human-rna-bcr-umi-archer` for IDT Archer kits
- Added preset `idt-human-rna-bcr-umi-archer` and `idt-human-rna-tcr-umi-archer` for IDT Archer kits
2 changes: 1 addition & 1 deletion regression/presets/analyze/idt-human-rna-bcr-umi-archer.yaml
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Expand Up @@ -261,7 +261,7 @@ assemble:
isolateChains: false
cloneAssemblerParameters:
assemblingFeatures:
- CDR3
- VDJRegion
minimalClonalSequenceLength: 12
qualityAggregationType: BetaScore
cloneClusteringParameters:
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4 changes: 3 additions & 1 deletion src/main/resources/presets/protocols/idt.yaml
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Expand Up @@ -39,4 +39,6 @@ idt-human-rna-bcr-umi-archer:
field: -isotype
insertIndex: -1
args:
- auto
- auto
- type: SetClonotypeAssemblingFeatures
features: [ "VDJRegion" ]
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