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  1. bamsurgeon bamsurgeon Public

    Forked from adamewing/bamsurgeon

    tools for adding mutations to existing .bam files, used for testing mutation callers

    Python

  2. bwa bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

    C

  3. pysam pysam Public

    Forked from pysam-developers/pysam

    Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

    C

  4. ichorCNA ichorCNA Public

    Forked from GavinHaLab/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    R

  5. sleuth sleuth Public

    Forked from pachterlab/sleuth

    Differential analysis of RNA-Seq

    R