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Update usage information for anonymizer #716

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merged 3 commits into from
Sep 25, 2023

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sanashah007
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specify what to do when converting from Dicom to Nifti

Fixes #715

Proposed Changes

  • Changed Usage.md documentations to specify what to do when using gandlf_anonymizer to convert from Dicom to Nifti

Checklist

  • I have read the CONTRIBUTING guide.
  • My PR is based from the current GaNDLF master .
  • Non-breaking change (does not break existing functionality): provide as many details as possible for any breaking change.
  • Function/class source code documentation added/updated.
  • Code has been blacked for style consistency.
  • If applicable, version information has been updated in GANDLF/version.py.
  • If adding a git submodule, add to list of exceptions for black styling in pyproject.toml file.
  • Usage documentation has been updated, if appropriate.
  • Tests added or modified to cover the changes; if coverage is reduced, please give explanation.
  • If customized dependency installation is required (i.e., a separate pip install step is needed for PR to be functional), please ensure it is reflected in all the files that control the CI, namely: python-test.yml, and all docker files [1,2,3].

specify what to do when converting from Dicom to Nifti
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github-actions bot commented Aug 22, 2023

MLCommons CLA bot All contributors have signed the MLCommons CLA ✍️ ✅

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@sarthakpati sarthakpati left a comment

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LGTM

@sarthakpati sarthakpati changed the title Update usage.md Update usage Aug 22, 2023
@sarthakpati sarthakpati changed the title Update usage Update usage information for anonymizer Aug 22, 2023
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Thanks for the PR @sanashah007! Please drop a comment when the CLA is done from your end and this can be merged).

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CLA is done!

@sarthakpati sarthakpati merged commit bc72ff0 into mlcommons:master Sep 25, 2023
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Successfully merging this pull request may close these issues.

Converting DICOM to NIfTI using Gandlf_Anonymizer requires specifying a .nii.gz output file (not a folder).
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