Detection of the first fatal elephant endotheliotropic herpesvirus type 5 in captive Asian elephant in Germany

Azza Abdelgawad*, Mariana Nascimento*, Adriane Prahl, Michael Flügger, Claudia A. Szentiks, Susanne Holtze, Thomas B. Hildebrandt, Jakob Trimpert**

* Both authors contributed equally

** Correspondence: Jakob.Trimpert@fu-berlin.de

This repository contains scripts used in the publication "Detection of the first fatal elephant endotheliotropic herpesvirus type 5 in captive Asian elephant in Germany" as well as generated consensus sequences and additional files. It also contains scripts used for pre-processing, mapping and variant calling of sequencing data. To access the scripts, please download the whole repository.