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molecular-systems-biology

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  1. Gibbs-energy-dissipation-limited-flux-balance-analysis Gibbs-energy-dissipation-limited-flux-balance-analysis Public

    Code to perform flux balance analysis with a limited Gibbs energy dissipation rate using the combined thermodynamic and stoichiometric models of E. coli and S. cerevisiae

    GAMS 5 1

  2. Coupled-oscillator-system Coupled-oscillator-system Public

    Code used to identify and simulate the coupled oscillator system

    GAMS 1

  3. Litsios-et-al-2019 Litsios-et-al-2019 Public

    Scripts used for Litsios et al. 2019

    MATLAB 1

  4. Vedelaar-et-al-2020 Vedelaar-et-al-2020 Public

    Script to determine persister fraction after nutrient shift

    MATLAB

  5. PunctaFinder PunctaFinder Public

    PunctaFinder algorithm

    Jupyter Notebook

Repositories

Showing 5 of 5 repositories
  • PunctaFinder Public

    PunctaFinder algorithm

    molecular-systems-biology/PunctaFinder’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 16, 2024
  • Vedelaar-et-al-2020 Public

    Script to determine persister fraction after nutrient shift

    molecular-systems-biology/Vedelaar-et-al-2020’s past year of commit activity
    MATLAB 0 0 0 0 Updated Jul 4, 2020
  • Litsios-et-al-2019 Public

    Scripts used for Litsios et al. 2019

    molecular-systems-biology/Litsios-et-al-2019’s past year of commit activity
    MATLAB 0 1 0 0 Updated Sep 20, 2019
  • Coupled-oscillator-system Public

    Code used to identify and simulate the coupled oscillator system

    molecular-systems-biology/Coupled-oscillator-system’s past year of commit activity
    GAMS 0 MIT 1 0 0 Updated Jul 8, 2019
  • Gibbs-energy-dissipation-limited-flux-balance-analysis Public

    Code to perform flux balance analysis with a limited Gibbs energy dissipation rate using the combined thermodynamic and stoichiometric models of E. coli and S. cerevisiae

    molecular-systems-biology/Gibbs-energy-dissipation-limited-flux-balance-analysis’s past year of commit activity
    GAMS 5 1 0 0 Updated Jun 25, 2019

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