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1. Fast-Plast Fast-Plast Public

   Automated de novo assembly of whole chloroplast genomes.

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2. FASTKs FASTKs Public

   Pipeline for generate Ks plots of transcriptome data.

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3. PhyDS PhyDS Public

   Phylogenetic iDentification of Subgenomes

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4. PUG PUG Public

   Testing WGD placement along a species tree using gene trees.

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5. Herbarium_Genomics Herbarium_Genomics Public

   Repository for various scripts and databases used for herbarium genomics.

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6. clone_reducer clone_reducer Public

   Clone reducing script used in Estep et al. (2014).

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