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v1.9.0

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@ms609 ms609 released this 29 Nov 08:08
· 187 commits to master since this release

New methods and functions

  • ZeroTaxonTree() creates a phylo object with no leaves.

  • DropTip() gains new methods DropTip.list() and DropTip.NULL().

  • as.matrix.phylo() converts a tree to a matrix representation, allowing
    a tree to be passed as a constraint to ImposeConstraint().

  • as.matrix.Splits() and as.matrix.phyDat() methods added as synonyms to
    as.logical.Splits() and PhyDatToMatrix().

Improvements

  • Handle TipLabels(0) and BalancedTree(0).

  • Support zero-leaf trees in as.Splits() and duplicated.Splits().

  • Support non-identical tip labels in as.Splits().

  • Try Latin-1 encoding if ReadCharacters() family fail under UTF-8.