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@mskcc-omics-workflows

MSKCC Omics Workflows

The MSKCC Omics Workflow development group's mission is to collabratively develop workflows using NextFlow.
README.md

Welcome 👋

The MSKCC Omics Workflow development group's mission is to develop collaborative workflows using Nextflow and nf-core.

📚 See available modules and subworkflow on the website.

👩‍💻 Check out the documentation.

🌈 Please abide by our community code of conduct

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  1. modules modules Public

    A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

    Python 5 3

  2. test-datasets test-datasets Public

    1

  3. containers containers Public

    Mono-repository for custom docker containers used in nextflow modules

    Dockerfile

  4. nextflow-training nextflow-training Public

    Training materials for an introduction to nextflow and nf-core.

    Nextflow 1

Repositories

Showing 9 of 9 repositories
  • modules Public

    A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

    mskcc-omics-workflows/modules’s past year of commit activity
    Python 5 3 32 9 Updated Nov 14, 2024
  • nucleovar Public
    mskcc-omics-workflows/nucleovar’s past year of commit activity
    Nextflow 0 MIT 0 2 4 Updated Nov 13, 2024
  • test-datasets Public
    mskcc-omics-workflows/test-datasets’s past year of commit activity
    0 1 0 0 Updated Nov 12, 2024
  • containers Public

    Mono-repository for custom docker containers used in nextflow modules

    mskcc-omics-workflows/containers’s past year of commit activity
    Dockerfile 0 0 1 0 Updated Oct 16, 2024
  • yaml_to_md Public

    Python script that converts a YAML file specifically Nextflow meta.yaml into a Markdown file based on a specified JSON schema

    mskcc-omics-workflows/yaml_to_md’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 4, 2024
  • .github Public
    mskcc-omics-workflows/.github’s past year of commit activity
    0 0 0 0 Updated Aug 29, 2024
  • modules-fork Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    mskcc-omics-workflows/modules-fork’s past year of commit activity
    Nextflow 0 MIT 722 0 6 Updated Sep 20, 2023
  • nextflow-training Public

    Training materials for an introduction to nextflow and nf-core.

    mskcc-omics-workflows/nextflow-training’s past year of commit activity
    Nextflow 0 1 0 0 Updated Jul 12, 2023
  • nfcore-cmd Public Forked from nf-core/tools

    Python package with helper tools for the nf-core community.

    mskcc-omics-workflows/nfcore-cmd’s past year of commit activity
    Python 0 MIT 191 0 0 Updated Dec 16, 2022

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