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Popular repositories

  1. JaBbA JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 55 25

  2. gGnome gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 38 19

  3. fishHook fishHook Public

    R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

    R 27 9

  4. gGnome.js gGnome.js Public

    JavaScript 26 5

  5. gTrack gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    R 16 12

  6. dryclean dryclean Public

    Irons out wrinkles in noisy coverage data using robust PCA

    R 12 14

Repositories

Showing 10 of 35 repositories
  • case-report Public

    Genomic case report

    mskilab-org/case-report’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 0 Updated Aug 16, 2024
  • gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    mskilab-org/gTrack’s past year of commit activity
    R 16 12 9 1 Updated Aug 15, 2024
  • nf-casereports Public

    End to end cancer genomics pipeline

    mskilab-org/nf-casereports’s past year of commit activity
    R 0 MIT 1 0 0 Updated Aug 14, 2024
  • fragCounter Public

    GC and mappability corrected fragment coverage for paired end whole genome sequencing

    mskilab-org/fragCounter’s past year of commit activity
    R 7 MIT 12 15 4 Updated Aug 2, 2024
  • skilift Public

    An R interface for loading and modifying PGV datafiles

    mskilab-org/skilift’s past year of commit activity
    R 0 3 2 0 Updated Jul 31, 2024
  • skitools Public

    General purpose mskilab R tools

    mskilab-org/skitools’s past year of commit activity
    R 6 8 0 1 Updated Jul 2, 2024
  • nf-jabba Public
    mskilab-org/nf-jabba’s past year of commit activity
    R 12 MIT 2 1 1 Updated Jul 2, 2024
  • chromunity Public

    Discovery of communities in Pore-C concatemers

    mskilab-org/chromunity’s past year of commit activity
    R 11 4 6 0 Updated Jun 19, 2024
  • gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    mskilab-org/gGnome’s past year of commit activity
    R 38 MIT 19 3 10 Updated Jun 13, 2024
  • JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    mskilab-org/JaBbA’s past year of commit activity
    R 55 MIT 25 10 1 Updated Jun 5, 2024
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