BRainwide Activity Induced by Neuromodulation via TRanscriptomics-Informed Pharmacological Simulation
Requires Python 3. One of the scripts demonstrates how to save brain map images using wbplot, and wbplot is NOT (as of Jun 13, 2021) compatible with Windows (due to the fact that some functionality in Connectome Workbench is not currently supported on the Windows operating system).
See the scripts for a few examples of how to use the modeling code in this package.
Additional data associated with this study can be downloaded from BALSA.
Please include the following citation if you use any of this code in your research:
- Burt, J. B., Preller, K. H., Demirtas, M., Ji, J. L., Krystal, J. H., Vollenweider, F. X., ... & Murray, J. D. (2021). Transcriptomics-informed large-scale cortical model captures topography of pharmacological neuroimaging effects of LSD. bioRxiv.
(If I forget to update this with the eLife reference and the study has since been published, please use that reference instead!)