compressed is deprecated - removed

muschellij2 · Mar 11, 2019 · 8fa7474 · 8fa7474
1 parent 3ba2b4c
commit 8fa7474
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Showing 4 changed files with 3 additions and 3 deletions.
diff --git a/R/dcmj2pnm.R b/R/dcmj2pnm.R
@@ -25,6 +25,7 @@
 #' }
 #' file = system.file("extdata", "example.dcm", package = "dcmtk")
 #' png_file = dcmj2pnm(file)
+#' print(png_file)
 #' img = png::readPNG(png_file)
 #' plot(1:2, type='n')
 #' image(img)

diff --git a/R/dcmtk_cmd.R b/R/dcmtk_cmd.R
@@ -48,7 +48,7 @@ dcmtk_cmd = function(
   opts = paste(opts, collapse = " ")
   cmd = paste(s, opts)
   if (!is.null(outfile)) {
-    outfile = paste(names(outfile), outfile)
+    outfile = paste(names(outfile), shQuote(outfile))
     outfile = paste(outfile, collapse = " ")
     cmd = paste(cmd, outfile)
   }

diff --git a/R/install_dcmtk.R b/R/install_dcmtk.R
@@ -104,7 +104,6 @@ install_dcmtk = function(
     if (ext == "bz2") {
       files = utils::untar(
         destfile,
-        compressed = "bzip2",
         list = TRUE,
         exdir = install_dir)
     }
@@ -120,7 +119,6 @@ install_dcmtk = function(
     if (ext == "bz2") {
       res = utils::untar(
         destfile,
-        compressed = "bzip2",
         exdir = install_dir)
       if (res != 0) {
         warning("Untarring the download did not succeed correctly!")

diff --git a/man/dcmj2pnm.Rd b/man/dcmj2pnm.Rd