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nathansam/README.md

Hi there 👋

ibdnathan r universe badge Personal website

Basic Info

I am a Precision Medicine PhD student predicting outcomes in inflammatory bowel disease.

  • 🔭 I’m currently working on the PREdiCCt study and the Lothian IBD Registry
  • 🎈 Member of Vallejos group
  • 🏢 Working at MRC Human Genetics Unit, The University of Edinburgh
  • 🏠 Living in Edinburgh, Scotland
  • 😄 Pronouns: he, him, his
  • 📄 My CV

Research

I am interested in predicting outcomes in inflammatory bowel disease and developing methods of stratifying patients to optimise treatment. As such, I specialise in methods of survival analysis, risk prediction, tool development, and bridging the divide between clinicians and statisticians.

I am supervised by Dr Catalina Vallejos and Professor Charlie Lees and financially supported by the Medical Research Council (MRC).

My talks repository contains PDF files of slides from presentations I have given.

I maintain some R packages:

Package CRAN R-universe Issues Pull requests
datefixR CRAN status datefixR status badge GitHub issues GitHub pulls
BASSLINE CRAN status status badge GitHub issues GitHub pulls
gameR CRAN status gameR status badge GitHub issues GitHub pulls

About Me

After completing a Mathematics undergraduate degree from Aberystwyth university, where I primarily focused on statistics and pure mathematics, I studied an MSc in Statistics for Computational Biology at the same institution. I am now a PhD student in the Vallejos group led by Dr Catalina Vallejos at the University of Edinburgh. I am a student on the Precision Medicine doctoral training programme. I have also worked on DECOVID as an analyst.

My personal interests include fitness and all things tech (especially PC hardware 🖥️).

Languages and Tools:

bash blender css3 docker html5 hugo illustrator javascript jekyll nodejs pandas photoshop R python rust scikit_learn swift tailwind tensorflow

GitHub stats GitHub stats

Connect with me:

email ibdnathan nathan-constantine-cooke

Pinned

  1. BASSLINE Public

    BAyeSian Survival anaLysIs usiNg shapE mixtures of log-normal distributions

    R

  2. A tool to keep track of benchmark results for an R package across versions

    R

  3. CircadianTools

    R

  4. Bash file for setting up a ubuntu server for data science

    Shell

  5. R package & markdown files to reproduce results from my MSc dissertation

    HTML

  6. 🗓 Standardize Dates in Different Formats or with Missing Data

    R 18 2

966 contributions in the last year

Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Mon Wed Fri

Contribution activity

September 2022

Created 1 repository

Created an issue in ropensci/datefixR that received 2 comments

Translate warnings/errors to French

The warnings and errors can be given in French by making edits to the the French translation file. Translations (msgstr) need to be provided for ea…

2 comments
Started 1 discussion in 1 repository
ropensci/datefixR
22 contributions in private repositories Sep 1 – Sep 22

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