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cave query: add livelive, fix live query #206

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merged 25 commits into from
Aug 15, 2024
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  • implements time travel of livelive annotations back to older segmentation versions
  • also includes two important bug fixes in flywire_rootid

* apparently versions were coming out of cave as numeric
* live is on by default if we have not specified a version
* live can specify a timestamp other than now
* store now timestamp just once so it's consistent if we have to read from multiple offsets
* it seems the timestamp was not previously being correctly processed anyway
* revealed by test for timetravel option
* if passed a version there was an error because flywire_timestamp doesn't like getting both version and timestamp
* thinko from previous large scale changes
* if we specify a version but it has expired, we need to use live mode to fetch it with a timestamp.
* simplify dict handling via cavedict_rtopy
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codecov bot commented Aug 15, 2024

Codecov Report

Attention: Patch coverage is 91.08911% with 9 lines in your changes missing coverage. Please review.

Project coverage is 58.32%. Comparing base (3d0cfaf) to head (7a68d6d).
Report is 26 commits behind head on master.

Files Patch % Lines
R/cave.R 90.72% 9 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #206      +/-   ##
==========================================
+ Coverage   57.34%   58.32%   +0.97%     
==========================================
  Files          38       38              
  Lines        5111     5190      +79     
==========================================
+ Hits         2931     3027      +96     
+ Misses       2180     2163      -17     

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@jefferis jefferis merged commit 5a3922b into master Aug 15, 2024
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@jefferis jefferis deleted the feature/live-query branch August 15, 2024 21:34
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