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  1. wgs-tmb wgs-tmb Public

    scripts to calculate tumor mutational burden from whole genome sequencing of tumors

    Perl 7 2

  2. aceseq2seg aceseq2seg Public

    scripts to convert the output files from ACEseq to the seg format used as input for GISTIC

    Perl 1

  3. plotgistic plotgistic Public

    scripts to create nice gistic visualisations

    R 1 1

  4. aceseq_hrd_standalone aceseq_hrd_standalone Public

    This workflow runs the calculation of the HRD step for ACEseq as a standalone plugin. This is based on the ACEseq (TODO: add link to hash ref on github)

    Python 1

  5. otp-project-softlinker otp-project-softlinker Public

    A perl script to create a softlink structure for analysing data processed by the One Touch Pipeline (OTP)

    Perl

  6. oncoprint-otp-project oncoprint-otp-project Public

    a set of scripts to prepare a project organised by OTP for oncoprint plotting

    Perl 1