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Add ability to analyze light chains #3

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marcelm opened this issue Feb 29, 2016 · 2 comments
Closed

Add ability to analyze light chains #3

marcelm opened this issue Feb 29, 2016 · 2 comments

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@marcelm
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marcelm commented Feb 29, 2016

Originally reported by: Marcel Martin (Bitbucket: marcelm, GitHub: marcelm)


The light chain doesn’t contain a D gene, but the pipeline currently complains if there is no D gene database.

Other fixes may also be necessary. Perhaps the CDR3 regex needs to be modified.


@marcelm
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marcelm commented Mar 2, 2016

Original comment by Marcel Martin (Bitbucket: marcelm, GitHub: marcelm):


It seems IgBLAST always wants a D gene database, at least the web interface does. This allows one to give it a mixture of sequences from heavy and light chains and it then decides for each sequence individually what it is.

@marcelm
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marcelm commented Mar 9, 2016

Original comment by Marcel Martin (Bitbucket: marcelm, GitHub: marcelm):


This is working now.

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