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This repository has been archived by the owner on Dec 5, 2023. It is now read-only.
Original comment byMarcel Martin (Bitbucket: marcelm, GitHub: marcelm):
It seems IgBLAST always wants a D gene database, at least the web interface does. This allows one to give it a mixture of sequences from heavy and light chains and it then decides for each sequence individually what it is.
Originally reported by: Marcel Martin (Bitbucket: marcelm, GitHub: marcelm)
The light chain doesn’t contain a D gene, but the pipeline currently complains if there is no D gene database.
Other fixes may also be necessary. Perhaps the CDR3 regex needs to be modified.
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