NCBench continuous small variants benchmarking workflow.

A Snakemake workflow for benchmarking callsets of small genomic variants, using popular benchmark datasets like Genome in a Bottle or CHM-eval.

Contributing callsets

1. Download raw data:

   dataset	link
   NA12878 Agilent (75M and 200M reads):
   NA12878 Twist (restricted access but you can ask for it via the zenodo interface):
   CHM:

2. Run your pipeline on it.
3. Upload results (VCF or BCF) to zenodo.
4. Create a pull request that adds your results to the config file, under variant-calls (see other entries for format).

Checking out results

The latest results for all contributed callsets are shown at https://ncbench.github.io.