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fasterq cannot extract FASTQ or FASTA after prefetch #849

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vicontfreetime opened this issue Sep 8, 2023 · 1 comment
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fasterq cannot extract FASTQ or FASTA after prefetch #849

vicontfreetime opened this issue Sep 8, 2023 · 1 comment

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@vicontfreetime
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Command: G:\Utils\sratoolkit.3.0.7-win64\bin>fasterq-dump.exe SRR11184930.sra --fasta -p -e 12 -O G:\DNA\Kazan
result:
lookup :|-------------------------------------------------- 100% merge : 1523447444 join :|-------------------------------------------------- 99.39%

And then error:
2023-09-08T03:42:44 fasterq-dump.3.0.7 err: cmn_iter.c cmn_read_uint32_array( #446157180 ).VCursorCellDataDirect() -> RC(rcPS,rcCondition,rcWaiting,rcTimeout,rcExhausted) 2023-09-08T03:42:44 fasterq-dump.3.0.7 err: cmn_iter.c cmn_read_String( #762624177 ).VCursorCellDataDirect() -> RC(rcPS,rcCondition,rcWaiting,rcTimeout,rcExhausted) fasterq-dump quit with error code -1073741819

@klymenko
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klymenko commented Mar 5, 2024

Please retry with our latest toolkit.

@klymenko klymenko closed this as completed Oct 1, 2024
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