Examples commit

papers/template/article.md

@@ -69,7 +69,7 @@ The observed phenotypic data were classified and recorded in a database. Frequen
 
 > If you choose to do any analysis in Jupyter Notebooks, include them as supporting materials. You can also include any data using a link to the data file directly.
 
-Our overall approach provides a practical and educational framework to engage in scientific research, allowing for the exploration of genetic variation through direct observation and analysis, fostering a deeper understanding of genetic principles, data-science and application to real-world contexts. We used Jupyter, NumPy and Pandas for the analysis [@jupyter; @numpy; @pandas]; the statistical analysis was completed with SciPy [@scipy].
+Our overall approach provides a practical and educational framework to engage in scientific research, allowing for the exploration of genetic variation through direct observation and analysis, fostering a deeper understanding of genetic principles, data-science and application to real-world contexts. We used NumPy and Pandas for the analysis [@numpy; @pandas]; the statistical analysis was completed with SciPy [@scipy].
 
 > The paragraph above references citation keys in our BibTeX file: [](./references.bib).
 

papers/template/references.bib

@@ -1,17 +1,3 @@
-@inproceedings{jupyter,
-  abstract  = {It is increasingly necessary for researchers in all fields to write computer code, and in order to reproduce research results, it is important that this code is published. We present Jupyter notebooks, a document format for publishing code, results and explanations in a form that is both readable and executable. We discuss various tools and use cases for notebook documents.},
-  author    = {Kluyver, Thomas and Ragan-Kelley, Benjamin and Pérez, Fernando and Granger, Brian and Bussonnier, Matthias and Frederic, Jonathan and Kelley, Kyle and Hamrick, Jessica and Grout, Jason and Corlay, Sylvain and Ivanov, Paul and Avila, Damián and Abdalla, Safia and Willing, Carol and {Jupyter development team}},
-  editor    = {Loizides, Fernando and Scmidt, Birgit},
-  location  = {Netherlands},
-  publisher = {IOS Press},
-  url       = {https://eprints.soton.ac.uk/403913/},
-  booktitle = {Positioning and Power in Academic Publishing: Players, Agents and Agendas},
-  date      = {2016},
-  pages     = {87--90},
-  title     = {Jupyter Notebooks - a publishing format for reproducible computational workflows},
-}
-
-
 @article{matplotlib,
   abstract     = {Matplotlib is a 2D graphics package used for Python for application development, interactive scripting, and publication-quality image generation across user interfaces and operating systems.},
   author       = {Hunter, J. D.},