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add touch matrix #30
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great! thanks for info. On Tue, Apr 5, 2016 at 9:33 AM, William Gray notifications@github.com
the glass is all full: half water, half air. |
In re-reading the supplement, seems that the input is slightly different than I thought: "The inputs to the Monte Carlo procedure are one matrix containing the number of times each axon touches each dendritic spine (usually 0 or 1) and a second, corresponding matrix that contains the number of synapses each axon forms with each spine (usually 0 or 1)." So I'm going to make the matrices in this way. This means the matrix is ~1295x600 or so...and that both matrices are different from the overall graph. It's easiest to make this first, so will do so and then we can iterate. |
ok, good catch, note that will make the statistics impossible. |
i thought you might say that. we can simplify (contract?) the resulting graph by choosing to then use neuron labels vs. spine labels, perhaps restricting to high degree. Don't know what the dimensions of that matrix will be or if it's amenable to analysis, but trivial to make from the other one. And much smaller, at least in one dimension. |
don't worry about it yet, let's just get the data right. On Sun, Apr 10, 2016 at 9:07 AM, William Gray notifications@github.com
the glass is all full: half water, half air. |
This was harder than expected. Currently have added functionality to better parse metadata so that we have a good way to isolate spines and their shafts, and made progress toward the below items.
Roadmap (completion beginning of next week):
@jovo - comments/feedback welcome. My top ND issue for the week.
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