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1. fast-oopsi fast-oopsi Public

   a repository containing everything relevant to our fast non-negative deconvolution work

   TeX 35 6

2. oopsi oopsi Public

   up-to-date code for model-based inference of spike trains from calcium imaging

   MATLAB 24 9

3. smc-oopsi smc-oopsi Public

   code to implement our sequential monte carlo (smc) algorithm to perform optimal optical spike inference (oopsi) for individual neurons

   MATLAB 17 5

4. FastApproximateQAP FastApproximateQAP Public

   Fast Approximate Quadratic Assignment for (Brain) Graph Matching

   TeX 16 9

5. pop-oopsi pop-oopsi Public

   this repository stores code, text, simulations, and figs (and maybe more) for our population oopsi filter

   MATLAB 13 2

6. PyGraphStat PyGraphStat Public

   python code for statistical analysis of graph-valued data

   Python 7 2