Fix relative imports (#222)

axondeepseg · Jun 12, 2019 · 09e3659 · 09e3659
1 parent 804ca0b
commit 09e3659
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Showing 7 changed files with 12 additions and 12 deletions.
diff --git a/AxonDeepSeg/apply_model.py b/AxonDeepSeg/apply_model.py
@@ -10,9 +10,9 @@
 import AxonDeepSeg.ads_utils
 from AxonDeepSeg.ads_utils import convert_path
 
-from .visualization.get_masks import get_masks
-from .patch_management_tools import im2patches_overlap, patches2im_overlap
-from .config_tools import update_config, default_configuration
+from AxonDeepSeg.visualization.get_masks import get_masks
+from AxonDeepSeg.patch_management_tools import im2patches_overlap, patches2im_overlap
+from AxonDeepSeg.config_tools import update_config, default_configuration
 
 def apply_convnet(path_acquisitions, acquisitions_resolutions, path_model_folder, config_dict, ckpt_name='model',
                   inference_batch_size=1, overlap_value=25, resampled_resolutions=[0.1],

diff --git a/AxonDeepSeg/data_management/data_augmentation.py b/AxonDeepSeg/data_management/data_augmentation.py
@@ -5,7 +5,7 @@
 from skimage.filters import gaussian
 import numpy as np
 import random
-from .patch_extraction import extract_patch
+from AxonDeepSeg.data_management.patch_extraction import extract_patch
 import AxonDeepSeg.ads_utils
 
 #######################################################################################################################

diff --git a/AxonDeepSeg/data_management/dataset_building.py b/AxonDeepSeg/data_management/dataset_building.py
@@ -7,7 +7,7 @@
 
 import AxonDeepSeg.ads_utils
 from AxonDeepSeg.data_management.input_data import labellize_mask_2d
-from .patch_extraction import extract_patch
+from AxonDeepSeg.data_management.patch_extraction import extract_patch
 from AxonDeepSeg.ads_utils import convert_path
 
 def raw_img_to_patches(path_raw_data, path_patched_data, thresh_indices = [0, 0.2, 0.8],

diff --git a/AxonDeepSeg/data_management/input_data.py b/AxonDeepSeg/data_management/input_data.py
@@ -14,7 +14,7 @@
 # AxonDeepSeg imports
 import AxonDeepSeg.ads_utils
 from AxonDeepSeg.patch_management_tools import apply_legacy_preprocess, apply_preprocess
-from .data_augmentation import *
+from AxonDeepSeg.data_management.data_augmentation import *
 
 
 def generate_list_transformations(transformations = {}, thresh_indices = [0,0.5], verbose=0):

diff --git a/AxonDeepSeg/network_construction.py b/AxonDeepSeg/network_construction.py
@@ -7,8 +7,8 @@
 os.environ['TF_CPP_MIN_LOG_LEVEL']='2' # Get rid of Tensorflow warnings.
 import tensorflow as tf
 import pickle
-from .data_management.input_data import input_data
-from .config_tools import generate_config
+from AxonDeepSeg.data_management.input_data import input_data
+from AxonDeepSeg.config_tools import generate_config
 import AxonDeepSeg.ads_utils
 
 
@@ -234,4 +234,4 @@ def uconv_net(x, training_config, phase, bn_updated_decay = None, verbose = True
     final_result = tf.reshape(finalconv,
         [tf.shape(finalconv)[0], data_temp_size[-1] * data_temp_size[-1], n_classes])
 
-    return final_result
+    return final_result
diff --git a/AxonDeepSeg/train_network.py b/AxonDeepSeg/train_network.py
@@ -13,8 +13,8 @@
 import AxonDeepSeg.ads_utils
 from AxonDeepSeg.ads_utils import convert_path
 
-from .data_management.input_data import input_data
-from .config_tools import generate_config
+from AxonDeepSeg.data_management.input_data import input_data
+from AxonDeepSeg.config_tools import generate_config
 
 
 def train_model(path_trainingset, path_model, config, path_model_init=None,

diff --git a/AxonDeepSeg/visualization/visualize.py b/AxonDeepSeg/visualization/visualize.py
@@ -18,7 +18,7 @@
 # AxonDeepSeg imports
 import AxonDeepSeg.ads_utils
 from AxonDeepSeg.ads_utils import convert_path
-from ..testing.segmentation_scoring import score_analysis, dice
+from AxonDeepSeg.testing.segmentation_scoring import score_analysis, dice
 
 
 def visualize_training(path_model, iteration_start_for_viz=0):