Remove resample argument from IBMA estimators
#900
Workflow file for this run
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| name: "Run Tests" | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - '*' | |
| concurrency: | |
| group: testing-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # Determine if tests should be run based on commit message. | |
| check_skip: | |
| name: Determine if CI should be skipped | |
| runs-on: ubuntu-latest | |
| outputs: | |
| skip: ${{ steps.result_step.outputs.ci-skip }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - id: result_step | |
| uses: mstachniuk/ci-skip@master | |
| with: | |
| commit-filter: '[skip ci];[ci skip];[skip github]' | |
| commit-filter-separator: ';' | |
| run_unit_tests: | |
| name: Unit tests | |
| needs: check_skip | |
| if: ${{ needs.check_skip.outputs.skip == 'false' }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 'Set up python' | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: 'Install NiMARE' | |
| shell: bash {0} | |
| run: pip install -e .[tests] | |
| - name: 'Run tests' | |
| shell: bash {0} | |
| run: make unittest | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: unit_${{ matrix.os }}_${{ matrix.python-version }} | |
| path: coverage.xml | |
| if: success() | |
| run_unit_tests_with_minimum_dependencies: | |
| name: Unit tests with minimum dependency versions | |
| needs: check_skip | |
| if: ${{ needs.check_skip.outputs.skip == 'false' }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8"] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 'Set up python' | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: 'Install NiMARE' | |
| shell: bash {0} | |
| run: pip install -e .[minimum,tests] | |
| - name: 'Run tests' | |
| shell: bash {0} | |
| run: make unittest | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: unit_minimum | |
| path: coverage.xml | |
| if: success() | |
| test_performance_estimators: | |
| name: Estimator performance tests | |
| needs: check_skip | |
| if: ${{ needs.check_skip.outputs.skip == 'false' }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8"] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 'Set up python' | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: 'Install NiMARE' | |
| shell: bash {0} | |
| run: pip install -e .[tests] | |
| - name: 'Run tests' | |
| shell: bash {0} | |
| run: make test_performance_estimators | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: performance_estimator | |
| path: coverage.xml | |
| if: success() | |
| test_performance_correctors: | |
| name: Corrector performance tests | |
| needs: check_skip | |
| if: ${{ needs.check_skip.outputs.skip == 'false' }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8"] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 'Set up python' | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: 'Install NiMARE' | |
| shell: bash {0} | |
| run: pip install -e .[tests] | |
| - name: 'Run tests' | |
| shell: bash {0} | |
| run: make test_performance_correctors | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: performance_corrector | |
| path: coverage.xml | |
| if: success() | |
| test_performance_smoke: | |
| name: Smoke performance tests | |
| needs: check_skip | |
| if: ${{ needs.check_skip.outputs.skip == 'false' }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8"] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 'Set up python' | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: 'Install NiMARE' | |
| shell: bash {0} | |
| run: pip install -e .[tests] | |
| - name: 'Run tests' | |
| shell: bash {0} | |
| run: make test_performance_smoke | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: performance_smoke | |
| path: coverage.xml | |
| if: success() | |
| upload_to_codecov: | |
| name: Upload coverage | |
| needs: [run_unit_tests,run_unit_tests_with_minimum_dependencies,test_performance_estimators,test_performance_correctors,test_performance_smoke] | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v2 | |
| - name: Upload to CodeCov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| fail_ci_if_error: true |