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Nexomis

Solution Architect in Computational Biology #DevOps #ML #BioInfo

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  1. tf_tk tf_tk Public

    terrform toolkit

    HCL

  2. terraform_nf_awsbatch terraform_nf_awsbatch Public

    HCL

  3. viral_comp viral_comp Public

    Python

  4. ghcr-macse ghcr-macse Public

    Image definition for macse: https://www.agap-ge2pop.org/macsee-pipelines/

    Dockerfile

  5. .github .github Public

  6. ghcr-augustus ghcr-augustus Public

    Augustus Docker image definition (https://github.com/Gaius-Augustus/Augustus)

    Dockerfile

Repositories

Showing 10 of 37 repositories
  • viral-assembly Public

    Assemble the viral genome and perform the associated quality control (QC). Start with raw reads and one pre-built reference database in standard format (see README.md).

    nexomis/viral-assembly’s past year of commit activity
    Nextflow 0 Apache-2.0 0 1 0 Updated Oct 16, 2024
  • viral-variant Public

    Calling variants (exhaustive - by position) with peptide impact and comparison between samples (via transfer annotation)

    nexomis/viral-variant’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 16, 2024
  • nf-process Public

    Process as modules

    nexomis/nf-process’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Oct 16, 2024
  • nf-subworkflows Public

    subworkflows for nextflow

    nexomis/nf-subworkflows’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Oct 16, 2024
  • ghcr-pandas Public

    Python with pandas

    nexomis/ghcr-pandas’s past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Oct 15, 2024
  • spawn-rstudio Public

    Script to spawn locally a rstudio server

    nexomis/spawn-rstudio’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 15, 2024
  • hannot Public

    nextflow pipeline for annotation using homology

    nexomis/hannot’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Oct 15, 2024
  • genvar Public
    nexomis/genvar’s past year of commit activity
    Python 0 0 0 0 Updated Oct 14, 2024
  • ghcr-ivar Public
    nexomis/ghcr-ivar’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 11, 2024
  • loose_ends Public

    Get rid of base at reads ends in a pileup file

    nexomis/loose_ends’s past year of commit activity
    C++ 0 0 0 0 Updated Oct 11, 2024
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