A proof of concept RNA-Seq pipeline with Nextflow
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RNA-Seq toy pipeline

A proof of concept of a RNA-Seq pipeline intended to show Nextflow scripting and reproducibility capabilities.

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How execute it

  1. Install Docker on your computer. Read more here https://docs.docker.com/

  2. Install Nextflow (version 0.24.x or higher)

    curl -fsSL get.nextflow.io | bash

  3. Pull the required Docker image as shown below:

    docker pull nextflow/rnatoy:1.3

  4. Launch the pipeline execution:

    nextflow run nextflow-io/rnatoy -with-docker