Added avian synonym for H7N9 virus.

nextstrain · Oct 4, 2017 · d23ae6a · d23ae6a
1 parent 18892b0
commit d23ae6a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/download_all.py b/download_all.py
@@ -96,7 +96,7 @@
         print(call)
         os.system(call)
 
-    elif params.virus == "h7n9":
+    elif params.virus == "h7n9" or params.virus == "avian":
 
         os.system("python vdb/h7n9_download.py -db vdb -v h7n9 --select locus:PB2 --fstem h7n9_pb2")
         os.system("python vdb/h7n9_download.py -db vdb -v h7n9 --select locus:PB1 --fstem h7n9_pb1")
@@ -108,4 +108,4 @@
         os.system("python vdb/h7n9_download.py -db vdb -v h7n9 --select locus:NS --fstem h7n9_ns")
 
     else:
-        print("%s is an invalid virus type.\nValid viruses are flu, ebola, dengue, zika, and h7n9."%(params.virus))
+        print("%s is an invalid virus type.\nValid viruses are flu, ebola, dengue, zika, h7n9, and avian."%(params.virus))