Dates not downloading properly

[trvrb]

I just tried to run python vdb/download.py -db vdb -v zika --fstem zika and I got:

>Zhejiang04|zika|KX117076|?|china|china|china|china|genbank|genome|Zhang et al
>1_0015_PF|zika|KX447511|?|oceania|french_polynesia|french_polynesia|french_polynesia|vipr|genome|Nougairede et al

All the collection_dates have been replaced with ?. Not exactly sure what's going on here. All the dates in the db itself look fine. Strangely python vdb/download.py -db vdb -v zika --fstem zika --ftype json is working just as it should.

[chacalle]

I think we've been using zika_download.py which is why we haven't seen this bug. So python vdb/zika_download.py -db vdb -v zika --fstem zika. Changed the default fasta fields in download.py to align with zika_download.py though.

[trvrb]

User error 😬. Sorry about that. Thanks for amending.

[chacalle]

No problem. It might make sense to switch to just one download script that gets called and then the virus argument determines what methods need to be overwritten/added. This would reduce the confusion of specifying both zika_download and -v zika.