add new location

nextstrain · Jan 13, 2021 · ce07fc7 · ce07fc7
1 parent 0f775df
commit ce07fc7
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Showing 5 changed files with 14 additions and 8 deletions.
diff --git a/defaults/color_ordering.tsv b/defaults/color_ordering.tsv
@@ -1288,9 +1288,6 @@ location	Northamtonshire
 location	London
 location	Warwickshire
 
-# Auckland
-location	Counties Manukau
-
 ### France
 # Bretagne
 location	Ploudalmezeau
@@ -4239,7 +4236,6 @@ division	Chattogram
 division	Barishal
 division	Khulna
 division	Dhaka
-division	Brahmanbaria
 division	Rajshahi
 division	Bangladesh
 division	Mymensingh
@@ -4633,6 +4629,9 @@ division	Kwale
 division	Mombasa
 division	Taita Taveta
 division	Kilifi
+division	Lamu
+division	Kajiado
+division	Tana River
 division	Kenya
 
 ### Ethiopia
@@ -4713,13 +4712,12 @@ division	Catalunya
 division	Balear Islands
 
 ### United Kingdom
-division	Northern Ireland
 division	Gibraltar
-division	Scotland
 division	Wales
-division	United Kingdom
 division	England
-division	Auckland
+division	United Kingdom
+division	Northern Ireland
+division	Scotland
 
 ### Andorra
 division	Andorra
@@ -4875,6 +4873,7 @@ division	Germany
 division	Thuringia
 division	Bavaria
 division	Saxony-Anhalt
+division	Mecklenburg-Vorpommern
 division	Brandenburg
 division	Western Pomerania
 division	Berlin

diff --git a/defaults/lat_longs.tsv b/defaults/lat_longs.tsv
@@ -3712,6 +3712,7 @@ division	Kabardino-Balkaria	43.4428286	43.4204809
 division	Kabul	34.5260109	69.1776838
 division	Kaduna State	10.3825318	7.8533226
 division	Kaggevinne	50.9794	5.0190
+division	Kajiado	-2.12171705	36.78625503675998
 division	Kakanj	44.1280	18.1178
 division	Kaliningrad Region	54.7293041	21.1489473
 division	Kalmar	56.6634	16.3568
@@ -3810,6 +3811,7 @@ division	Lakes	-38.5882085	175.9492056
 division	Lambayeque	-6.707066	-79.907239
 division	Lamentin	16.2703423	-61.6303025
 division	Lampung	-4.8555039	105.0272986
+division	Lamu	-2.2675396	40.9010641
 division	Landen	39.3120	-84.2830
 division	Lao Cai	22.3381	104.1487
 division	Laois	52.998490450000006	-7.377700166944578
@@ -4333,6 +4335,7 @@ division	Tajikistan	38.8610	71.2761
 division	Tamaulipas	23.9891553	-98.7026825
 division	Tambov Region	52.9019574	41.3578918
 division	Tamil Nadu	11.1271	78.6569
+division	Tana River	-1.53651195	39.55083745466502
 division	Tangail	24.248630	89.917926
 division	Tanzania	-6.5247123	35.7878438
 division	Taranaki	-39.2711067	174.154795

diff --git a/scripts/developer_scripts/config_files_additional_info/purpose_of_sequencing.txt b/scripts/developer_scripts/config_files_additional_info/purpose_of_sequencing.txt
@@ -6,3 +6,4 @@ Not screen by S dropout	Not S dropout
 Not S dropout	Not S dropout
 not screened by S drop out	Not S dropout
 Screened by S dropout	S dropout
+screened by S drop out	S dropout
diff --git a/scripts/developer_scripts/config_files_additional_info/travel_pattern.txt b/scripts/developer_scripts/config_files_additional_info/travel_pattern.txt
@@ -38,3 +38,5 @@ imported case from XXX
 Imported case from XXX
 Patient with travel history to XXX
 Returned from the XXX
+Arrived from the XXX
+Traveled from XXX
diff --git a/scripts/developer_scripts/config_files_parse_metadata/false_divisions.txt b/scripts/developer_scripts/config_files_parse_metadata/false_divisions.txt
@@ -196,3 +196,4 @@ Ksar Hellal	Monastir
 Dresden	Saxony
 Ignalina	Utena
 Ukmerge	Vilnius
+Brahmanbaria	Chattogram