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Update sequences to exclude
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These were discovered in calculations of "mutational fitness", where these genomes often have stretches of >1000 sites that are gapped.
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trvrb committed Sep 19, 2021
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Expand Up @@ -10550,4 +10550,29 @@ Italy/VEN-IZSVe-21RS8085-7_TV/2020
USA/DC-DFS-PHL-01331/2020
USA/TX-HHD-210729KVI6183/2020

# Large stretches of gaps (often >1000)
Greece/2017551/2020
India/GJ-INSACOG-GBRC2186/2020
Israel/n14284/2020
Kazakhstan/NRL-KZY-273S/2021
Netherlands/Dalen_1363624/2020
Netherlands/Delft_1363424/2020
Netherlands/Diemen_1363454/2020
Netherlands/Friesland_27/2020
Netherlands/Gelderland_58/2020
Netherlands/Gelderland_68/2020
Netherlands/Gelderland_107/2020
Netherlands/Houten_1363498/2020
Netherlands/Limburg_6/2020
Netherlands/NA_141/2020
Netherlands/NA_248/2020
Netherlands/NA_547/2020
Netherlands/NA_599/2020
Netherlands/NA_666/2020
Netherlands/NoordBrabant_72/2020
Netherlands/Utrecht_13/2020
Netherlands/ZuidHolland_166/2020
Netherlands/ZuidHolland_213/2020
USA/ID-IBL-637649/2020
USA/TX-HMH-MCoV-41497/2020

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