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ENH: Add unaliased pango column to 21L focus build #37

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corneliusroemer opened this issue Sep 4, 2022 · 1 comment
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ENH: Add unaliased pango column to 21L focus build #37

corneliusroemer opened this issue Sep 4, 2022 · 1 comment
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enhancement New feature or request

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@corneliusroemer
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Many aliases are popping up - confusing even me. Would be great to have also an unaliased column. This would allow for depth first sorting too - aliasing screws that up at the moment.

I'd keep BA unexpanded, so BA.2.75 -> BA.2.75, but BL.1 -> BA.2.75.1.1

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Should be possible to be added pretty easily by a small Python script in the workflow.

Can use pango_aliasor package.

Would make nextstrain/nextclade#984 less pressing

@corneliusroemer corneliusroemer added the enhancement New feature or request label Sep 4, 2022
@corneliusroemer corneliusroemer self-assigned this Sep 4, 2022
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Can be tested on nextclade.dev with the BA.2 dataset (click on change and scroll down)
image

Particularly useful is sort - which will now sort so that aliased children are next to their unaliased parents!

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