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Add preserve realign + index #495

Merged
merged 4 commits into from
Jul 13, 2020
Merged

Add preserve realign + index #495

merged 4 commits into from
Jul 13, 2020

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apeltzer
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@apeltzer apeltzer commented Jul 8, 2020

This should fix #444

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repo
  • Ensure the test suite passes (nextflow run . -profile test,docker --paired_end).
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

@apeltzer apeltzer requested review from jfy133 and aidaanva July 8, 2020 18:33
@apeltzer apeltzer mentioned this pull request Jul 8, 2020
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jfy133
jfy133 requested changes Jul 9, 2020
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@apeltzer apeltzer requested a review from jfy133 July 10, 2020 11:07
@jfy133 jfy133 merged commit d4efd15 into dev Jul 13, 2020
@jfy133 jfy133 deleted the fix-indices-gatk branch July 20, 2020 07:08
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@jfy133 jfy133 jfy133 approved these changes

@aidaanva aidaanva Awaiting requested review from aidaanva

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@apeltzer @jfy133