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Add compatibility for sralite files #173

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wzheng0520 opened this issue Jun 25, 2023 · 0 comments · May be fixed by #269
Closed

Add compatibility for sralite files #173

wzheng0520 opened this issue Jun 25, 2023 · 0 comments · May be fixed by #269
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@wzheng0520
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Description of the bug

Hi,

When I tried to download some sralite files and transfer it into the fasta files, looks like due to the version of sra-tools version 2.11.0 which is too old, I could not use that to make the fastq files. Based on the reference https://www.ncbi.nlm.nih.gov/sra/docs/sra-data-formats/, is that possible to update the sra-tools version in process SRATOOLS_FASTERQDUMP into higher version (at least over 2.11.2) to make the function of change sralite into fastq become available?

Command used and terminal output

Command error:
  2023-06-23T01:01:29 fasterq-dump.2.11.0 err: invalid accession 
  fasterq-dump quit with error code 3

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@wzheng0520 wzheng0520 added the bug Something isn't working label Jun 25, 2023
@drpatelh drpatelh changed the title The sralite files could not be transfer into the fastq files due to sra-tools version Add compatibility for sralite files Oct 6, 2023
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