Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

fetchngs fails if FTP is blocked #57

Closed
kvn95ss opened this issue Nov 26, 2021 · 1 comment · Fixed by #80
Closed

fetchngs fails if FTP is blocked #57

kvn95ss opened this issue Nov 26, 2021 · 1 comment · Fixed by #80
Assignees
@maxibor
Labels
documentation Improvements or additions to documentation enhancement Improvement for existing functionality

Comments

@kvn95ss
Copy link

kvn95ss commented Nov 26, 2021

Hello!

I'm working from an institute where FTP access has been restricted. Due to this, fetchngs is not able to download any sequences and keeps failling.

Would it be possible to add a 'http' download option? Right now I'm downloading the data using prefetch which uses http and it works just fine.
@kvn95ss kvn95ss added the enhancement Improvement for existing functionality label Nov 26, 2021
@RoganGrant
Copy link
Member

I had the same issue, but I believe the enhancement has since been added. You can specify the flag --force_sratools_download. The documentation is good in the parameter docs, but might be worth adding a line to the usage docs during the pending hackathon.

@RoganGrant RoganGrant added the documentation Improvements or additions to documentation label Feb 26, 2022
@maxibor maxibor self-assigned this Mar 17, 2022
@maxibor maxibor mentioned this issue Mar 17, 2022
Merged
1 task
@maxibor maxibor linked a pull request Mar 17, 2022 that will close this issue
Add troubleshooting section and FTP alternative docs #80
Merged
1 task
drpatelh added a commit to drpatelh/nf-core-fetchngs that referenced this issue May 16, 2022
@drpatelh
Follow up fixes to nf-core#57
2f260ba
drpatelh added a commit that referenced this issue May 17, 2022
@drpatelh
Merge pull request #91 from drpatelh/updates
1751937 
Follow up fixes to issue #57
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@maxibor maxibor

Labels
documentation Improvements or additions to documentation enhancement Improvement for existing functionality
Projects
No open projects
Hackathon-March-2022
Status: Done
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Add troubleshooting section and FTP alternative docs maxibor/fetchngs
4 participants
@maxibor @RoganGrant @drpatelh @kvn95ss