conda env

[nservant]

Still some conflicts in the conda environment ...

UnsatisfiableError: The following specifications were found to be in conflict:
  - multiqc=1.7
  - python=2.7.13
  - samtools=1.9

It's weird because it worked a couple of weeks ago
https://cloud.docker.com/repository/registry-1.docker.io/nservant/nf-core-hic/builds/50070f2e-d934-4b17-b581-80acae69c31e

[nservant]

works well if I removed

- multiqc=1.7

Is there any reason for that ?

[apeltzer]

Multiqc 1.7 is Python>3, so its exclusive. Are your other tools python3+ compatible? THen you could simply go for Python3.7 ...

[nservant]

Unfortunately, the other tools are no yet python3 compatible. It's in the todo list
I tried to change ;

  - bioconda::multiqc==1.6=py27h24bf2e0_0

But still the same issue

[nservant]

bumping to python=2.7.16 seems to fix the issue ...