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PR checklist
scrape_software_versions.py
nf-core lint .
).nextflow run . -profile test,docker
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).This PR parallelizes the
wfmash
process so it can scale on a whole cluster. This is possible with the https://github.com/ekg/wfmash/blob/master/scripts/split_approx_mappings_in_chunks.py script thanks to @AndreaGuarracino!wfmash
.wfmash
for each chunk in parallel process submissions.--wfmash_only
parameter stops the pipeline after thewfmash
step. This makes it possible for user to scale onlywfmash
across a whole cluster.