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parallelize vg_deconstruct #73

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merged 1 commit into from
Nov 30, 2021
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/pangenome branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

This PR parallelizes the vg_deconstruct process. If more than one reference path for the vg deconstruction process is specified, we scale in parallel :)

@subwaystation subwaystation merged commit 33240de into dev Nov 30, 2021
@heuermh heuermh deleted the parallelize_vg_deconstruct branch February 22, 2024 16:12
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