sample sheet condition column needs to be relevel with contrast information

[lpantano]

Description of the bug

if you use something different than treatment vs control, the pipeline will fail in the anota2seqrun R script because the order of contrast and the levels of sample_treatment_col doesn't need to be the same, since they are sorted by alphanumeric characters.

One line in that script to relevel that column with the contrast reference information will fix it

Command used and terminal output

No response

Relevant files

No response

System information

No response