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Preprocessing steps need reordering #1153

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pinin4fjords opened this issue Jan 4, 2024 · 1 comment
Closed

Preprocessing steps need reordering #1153

pinin4fjords opened this issue Jan 4, 2024 · 1 comment
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bug Something isn't working
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3.14.0

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@pinin4fjords
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Description of the bug

The current placement of strand inference before other processing creates difficulties, for example with short and/or adapter-heavy reads which don't align until they've been trimmed and filtered.

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@pinin4fjords pinin4fjords added the bug Something isn't working label Jan 4, 2024
@pinin4fjords pinin4fjords added this to the 3.14.0 milestone Jan 4, 2024
@drpatelh
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drpatelh commented Jan 5, 2024

Should be fixed in #1154

@drpatelh drpatelh closed this as completed Jan 5, 2024
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@pinin4fjords @drpatelh