Add UMI deduplication before quantification in tube map

[hendrikweisser]

Description of the bug

On the "Introduction" page of the workflow documentation, in the "Pipeline summary" section (https://nf-co.re/rnaseq/3.9#pipeline-summary), specifically in the diagram and list of steps, "UMI-tools dedup" appears quite late in the pipeline (stage 4 in the diagram, step 9 in the list). My understanding is that the deduplication should happen before quantification, and that this is the case since #576/#593. Should the documentation be updated accordingly, to avoid confusion?

Command used and terminal output

No response

Relevant files

No response

System information

No response

[drpatelh]

Fixed in #912

Well spotted!