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nf-test quantify pseudoalignment #1246
Merged
adamrtalbot
merged 13 commits into
nf-core:dev
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adamrtalbot:nf-test_quantify_pseudoalignment
Mar 12, 2024
Merged
nf-test quantify pseudoalignment #1246
adamrtalbot
merged 13 commits into
nf-core:dev
from
adamrtalbot:nf-test_quantify_pseudoalignment
Mar 12, 2024
Commits on Mar 8, 2024
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Fix bugs in quantify_pseudoalignment
Fixes: - a single sample will now work and not raise an error when trying to parse the count data - duplicate transcripts now work with Salmon (previously it dropped one of them)
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Commits on Mar 12, 2024
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Changes: - SALMON_INDEX will keep duplicates - summarizedexperiment will handle the missing transcripts - Version numbers checked in QUANTIFY_PSEUDO_ALIGNMENT subworkflow
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