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Update bam_markduplicates_picard subworkflow #1274

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merged 2 commits into from
Apr 5, 2024
Merged

Update bam_markduplicates_picard subworkflow #1274

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e79a587
Update bam_markduplicates_picard subworkflow
adamrtalbot Mar 22, 2024
18debd9
Merge branch 'dev' into update_bam_markduplicates_picard
adamrtalbot Mar 22, 2024
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4 changes: 2 additions & 2 deletions modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -97,7 +97,7 @@
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "ec833ac4c29db6005d18baccf3306f557c46b006",
"git_sha": "1943aa60f7490c3d6740e8872e6e69122ccc8087",
"installed_by": ["bam_markduplicates_picard"]
},
"preseq/lcextrap": {
Expand Down Expand Up @@ -280,7 +280,7 @@
},
"bam_markduplicates_picard": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"git_sha": "1943aa60f7490c3d6740e8872e6e69122ccc8087",
"installed_by": ["subworkflows"]
},
"bam_rseqc": {
Expand Down
23 changes: 13 additions & 10 deletions modules/nf-core/picard/markduplicates/main.nf
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10 changes: 7 additions & 3 deletions modules/nf-core/picard/markduplicates/meta.yml
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26 changes: 9 additions & 17 deletions modules/nf-core/picard/markduplicates/tests/main.nf.test
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56 changes: 46 additions & 10 deletions modules/nf-core/picard/markduplicates/tests/main.nf.test.snap
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28 changes: 17 additions & 11 deletions subworkflows/nf-core/bam_markduplicates_picard/main.nf
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