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Use Github Action to detect file changes instead of custom Python code #1322

Merged
merged 3 commits into from
Jun 19, 2024
Merged

Use Github Action to detect file changes instead of custom Python code #1322

merged 3 commits into from
Jun 19, 2024

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adamrtalbot
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@adamrtalbot adamrtalbot commented Jun 19, 2024 •
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Replaces the Python code with native Github Action which can be found here: https://github.com/adamrtalbot/detect-nf-test-changes

Should be easier to maintain in a central location.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

adamrtalbot
adamrtalbot commented Jun 19, 2024
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github-actions bot commented Jun 19, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 923ba72

+| ✅ 171 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   7 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-06-19 09:16:25

maxulysse
maxulysse approved these changes Jun 19, 2024
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<3

@pinin4fjords
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LGTM, let's just merge and ask forgiveness later if it doesn't behave as expected with the next PR

pinin4fjords
pinin4fjords reviewed Jun 19, 2024
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.github/workflows/ci.yml
python-version: "3.11"
architecture: "x64"
- uses: actions/checkout@v4
- uses: actions/checkout@v3
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Reason for the reversion?

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Bugger: #1323

@adamrtalbot adamrtalbot merged commit 73fde4c into nf-core:dev Jun 19, 2024
20 checks passed
pinin4fjords
pinin4fjords approved these changes Jun 19, 2024
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LGTM, trivial comment only

@adamrtalbot adamrtalbot deleted the detect-changes-via-pre-built-gha branch June 19, 2024 09:38
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@maxulysse maxulysse maxulysse approved these changes

@pinin4fjords pinin4fjords pinin4fjords approved these changes

@drpatelh drpatelh Awaiting requested review from drpatelh

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@adamrtalbot @pinin4fjords @maxulysse