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Attempt at fixing markdup memory issues #179

Merged
merged 5 commits into from
Mar 25, 2019
Merged

Attempt at fixing markdup memory issues #179

merged 5 commits into from
Mar 25, 2019

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apeltzer
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This should fix the issues with nf-core/rnaseq on some weird samples where markDuplicates always consumes more memory than it should be using and thus gets consistently killed on various cluster environments. We had similar issues in Sarek at some point and I took the same approach over here to hopefully fix these matters now: SciLifeLab/Sarek#689

We're testing locally atm, but I already wanted to give people some heads-up that I'm on it.

@apeltzer apeltzer added the WIP Work in progress label Mar 25, 2019
@apeltzer apeltzer removed the WIP Work in progress label Mar 25, 2019
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@ewels ewels left a comment

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Tidy beans!

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2 participants