Merge pull request #1224 from nf-core/update_bcftools_sort

New version of BCFTOOLS_SORT-module with '--temp-dir .' added as opti…
nf-core · Sep 12, 2023 · 4f1a9fc · 4f1a9fc
2 parents 3c91af4 + 87d74e8
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -64,6 +64,7 @@ Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe mas
 - [#1216](https://github.com/nf-core/sarek/pull/1216) - Better test coverage for variant calling `*_all` subworkflows
 - [#1217](https://github.com/nf-core/sarek/pull/1217) - Fix `groupTuple` statement for mutect2 tumor_only subworkflows
 - [#1220](https://github.com/nf-core/sarek/pull/1220) - Fix channel and meta logic for `joint_mutect2` feature
+- [#1224](https://github.com/nf-core/sarek/pull/1224) - Update BCFTOOLS_SORT module with `--temp-dir .` added as option, which was required for Singularity
 - [#1225](https://github.com/nf-core/sarek/pull/1225) - Better test coverage for all tests
 
 ### Dependencies

diff --git a/modules.json b/modules.json
@@ -22,7 +22,7 @@
                     },
                     "bcftools/sort": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "d6d112a1af2ee8c97fc1932df008183341e7d8fe",
                         "installed_by": ["modules"]
                     },
                     "bcftools/stats": {

diff --git a/modules/nf-core/bcftools/sort/main.nf b/modules/nf-core/bcftools/sort/main.nf