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New version of BCFTOOLS_SORT-module with '--temp-dir .' added as opti… #1224

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merged 4 commits into from Sep 12, 2023
Merged

New version of BCFTOOLS_SORT-module with '--temp-dir .' added as opti… #1224

merged 4 commits into from Sep 12, 2023

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asp8200
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@asp8200 asp8200 commented Sep 12, 2023 •
edited

New version of BCFTOOLS_SORT-module with --temp-dir . added as option for bcftools sort.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Sep 12, 2023 •
edited

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit ee9e561

+| ✅ 140 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.9
  • Run at 2023-09-12 09:15:58

@maxulysse
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Can you update CHANGELOG too?

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asp8200 commented Sep 12, 2023

Can you update CHANGELOG too?

You don't read the description of PR's, do you? 😁

@asp8200 asp8200 marked this pull request as ready for review September 12, 2023 09:14
maxulysse
maxulysse reviewed Sep 12, 2023
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@asp8200 @maxulysse
Update CHANGELOG.md
87d74e8 
Co-authored-by: Maxime U Garcia <max.u.garcia@gmail.com>
@asp8200 asp8200 merged commit 4f1a9fc into dev Sep 12, 2023
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@asp8200 asp8200 deleted the update_bcftools_sort branch September 12, 2023 11:05
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@maxulysse maxulysse maxulysse approved these changes

@SPPearce SPPearce Awaiting requested review from SPPearce

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