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add back dropped parens
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allaway committed Feb 7, 2024
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -36,7 +36,7 @@ Depending on the options and samples provided, the pipeline can currently perfor
- Map Reads to Reference (`BWA-mem`, `BWA-mem2`, `dragmap` or `Sentieon BWA-mem`)
- Process BAM file (`GATK MarkDuplicates`, `GATK BaseRecalibrator` and `GATK ApplyBQSR` or `Sentieon LocusCollector` and `Sentieon Dedup`)
- Summarise alignment statistics (`samtools stats`, `mosdepth`)
- Variant calling (enabled by `--tools`, see [compatibility](https://nf-co.re/sarek/latest/docs/usage#which-variant-calling-tool-is-implemented-for-which-data-type):
- Variant calling (enabled by `--tools`, see [compatibility](https://nf-co.re/sarek/latest/docs/usage#which-variant-calling-tool-is-implemented-for-which-data-type)):
- `ASCAT`
- `CNVkit`
- `Control-FREEC`
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