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Add module bcftools/norm to sarek (in progress) #1483

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Add module bcftools/norm to sarek (in progress) #1483

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Commits on Jan 17, 2024

  1. Rename cloudtest back to awstest

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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  2. Change logic of cloud tests workflow

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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  3. fixup

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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  4. Add repo protection back in

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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  5. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Jan 17, 2024
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  6. Change logic of if statement in cloud tests

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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  7. Trying contains statement

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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  8. Add comments|

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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  9. CHANGELOG

    @adamrtalbot
    adamrtalbot committed Jan 17, 2024
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Commits on Apr 24, 2024

  1. feat(nf-prov): pin nf-prov to 1.2.2

    @maxulysse
    maxulysse committed Apr 24, 2024
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Commits on Apr 25, 2024

  1. First modification to contribute to the bcftools/norm module in Sarek

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  2. Changes in the GERMLINE_VCFS_NORM process

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  3. Add fasta argument to POST_VARIANTCALLING process.

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  4. add fasta input as argument

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  5. remove vcfs in the GERMLINE_VCFS_NORM process, replaced by germline_v… 

    …cfs_with_tbis and fasta.
    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  6. feat(CHANGELOG): update CHANGELOG

    @maxulysse
    maxulysse committed Apr 25, 2024
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  7. Merge branch 'dev' into improve_cloud_tests_matrix

    @maxulysse
    maxulysse committed Apr 25, 2024
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  8. Update .devcontainer/devcontainer.json

    @maxulysse
    maxulysse committed Apr 25, 2024
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  9. Rename awstest to cloudtest

    @adamrtalbot
    adamrtalbot committed Apr 25, 2024
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  10. Merge pull request nf-core#1482 from maxulysse/nf-prov 

    feat(nf-prov): pin nf-prov to 1.2.2
    @maxulysse
    maxulysse committed Apr 25, 2024
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  11. Merge pull request nf-core#1378 from nf-core/improve_cloud_tests_matrix 

    Improve cloud testing matrix strategy
    @maxulysse
    maxulysse committed Apr 25, 2024
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  12. First modification to contribute to the bcftools/norm module in Sarek

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  13. Changes in the GERMLINE_VCFS_NORM process

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  14. Add fasta argument to POST_VARIANTCALLING process.

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  15. add fasta input as argument

    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  16. remove vcfs in the GERMLINE_VCFS_NORM process, replaced by germline_v… 

    …cfs_with_tbis and fasta.
    @JC-Delmas
    JC-Delmas committed Apr 25, 2024
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  17. Update workflows/sarek/main.nf 

    resolve issue with spacing

Co-authored-by: Maxime U Garcia <maxime.garcia@seqera.io>
    @JC-Delmas @maxulysse
    JC-Delmas and maxulysse committed Apr 25, 2024
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Commits on Apr 30, 2024

  1. Resolved merge conflict by keeping changes from branch 34bf47b

    @JC-Delmas
    JC-Delmas committed Apr 30, 2024
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  2. Refactor normalization and concatenation of VCF files

    @JC-Delmas
    JC-Delmas committed Apr 30, 2024
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Commits on May 16, 2024

  1. Modify and adjust two scripts to add normalization and integrate FAST… 

    …A support
    @JC-Delmas
    JC-Delmas committed May 16, 2024
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